PCA with missing values in Python


Emily

I am trying to perform PCA analysis on a masked array. As far as I know, it won't work matplotlib.mlab.PCAif the original 2D matrix is ​​missing values . Does anyone have a suggestion to use PCA with missing values ​​in Python?

thanks.

small

I think you may need to do some preprocessing of the data before doing PCA. you can use it:

sklearn.impute.SimpleImputer

https://scikit-learn.org/stable/modules/generation/sklearn.impute.SimpleImputer.html#sklearn.impute.SimpleImputer

Using this feature, you can automatically replace missing values ​​with mean, median, or most frequent values. It's hard to tell which option is the best, it depends on many factors, such as how the data looks.

By the way, you can also use PCA with the following libraries:

sklearn.decomposition.PCA

http://scikit-learn.org/stable/modules/generated/sklearn.decomposition.PCA.html

and many other statistical functions and machine learning techniques.

Related


PCA with missing values in Python

Emily I am trying to perform PCA analysis on a masked array. As far as I know, it won't work matplotlib.mlab.PCAif the original 2D matrix is missing values . Does anyone have a suggestion to use PCA with missing values in Python? thanks. small I think you may

PCA with missing values in Python

Emily I am trying to perform PCA analysis on a masked array. As far as I know, it won't work matplotlib.mlab.PCAif the original 2D matrix is missing values . Does anyone have a suggestion to use PCA with missing values in Python? thanks. small I think you may

PCA with missing values in Python

Emily I am trying to perform PCA analysis on a masked array. As far as I know, it won't work matplotlib.mlab.PCAif the original 2D matrix is missing values . Does anyone have a suggestion to use PCA with missing values in Python? thanks. small I think you may

PCA with missing values in Python

Emily I am trying to perform PCA analysis on a masked array. As far as I know, it won't work matplotlib.mlab.PCAif the original 2D matrix is missing values . Does anyone have a suggestion to use PCA with missing values in Python? thanks. small I think you may

Missing values in time series in Python

Marco Miglionico : I have a time series dataframe which is large and contains some missing values in two columns ("humidity" and "pressure"). I would like to impute these missing values in a clever way, such as using the value of the nearest neighbor or the av

Replacing missing and indeterminate values, Python

algamdi There are the following examples: import pandas as pd df = pd.DataFrame({ 'Column A' : ['null',20,30,40,'null'],'Column B' : [100,'null',30,50,'null']}); I need a Python function that takes two columns and compares them: If a column is missing a valu

Missing values in JSON decoding in Python

Andrea I'm actually going crazy trying to understand how to decode JSON logs received via REST calls. Here is my code: r = requests.get(url, auth=(a, b)) parsed = json.loads(r.content) for request in parsed['logs']: for z in request["request"]["input"]:

Replacing missing and indeterminate values, Python

algamdi There are the following examples: import pandas as pd df = pd.DataFrame({ 'Column A' : ['null',20,30,40,'null'],'Column B' : [100,'null',30,50,'null']}); I need a Python function that takes two columns and compares them: If a column is missing a valu

Replacing missing and indeterminate values, Python

algamdi There are the following examples: import pandas as pd df = pd.DataFrame({ 'Column A' : ['null',20,30,40,'null'],'Column B' : [100,'null',30,50,'null']}); I need a Python function that takes two columns and compares them: If a column is missing a valu

Replacing missing and indeterminate values, Python

algamdi There are the following examples: import pandas as pd df = pd.DataFrame({ 'Column A' : ['null',20,30,40,'null'],'Column B' : [100,'null',30,50,'null']}); I need a Python function that takes two columns and compares them: If a column is missing a valu

Replacing missing and indeterminate values, Python

algamdi There are the following examples: import pandas as pd df = pd.DataFrame({ 'Column A' : ['null',20,30,40,'null'],'Column B' : [100,'null',30,50,'null']}); I need a Python function that takes two columns and compares them: If a column is missing a valu

Replacing missing values in input Python

Pavlos Pantriadis Suppose your input is in the following format: id____value1____value2...valueN 1____hello____world...something 2________goodnight...world The four '_'should be'/t' What I've got so far is this: the first item has one {ID:1, value1:hello, val

Missing values in time series in Python

Marco Miglionico : I have a time series dataframe which is large and contains some missing values in two columns ("humidity" and "pressure"). I would like to impute these missing values in a clever way, such as using the value of the nearest neighbor or the av

Add missing values to Python dictionary

SDR3078 I currently have a dictionary with numeric indices as keys. I know how many values should be in the dictionary in total and want to add missing keys and null values to the dictionary. To illustrate, I've included this example: dictionary = {'0' : '101'

Replacing missing and indeterminate values, Python

algamdi There are the following examples: import pandas as pd df = pd.DataFrame({ 'Column A' : ['null',20,30,40,'null'],'Column B' : [100,'null',30,50,'null']}); I need a Python function that takes two columns and compares them: If a column is missing a valu

Replacing missing and indeterminate values, Python

algamdi There are the following examples: import pandas as pd df = pd.DataFrame({ 'Column A' : ['null',20,30,40,'null'],'Column B' : [100,'null',30,50,'null']}); I need a Python function that takes two columns and compares them: If a column is missing a valu

Replacing missing and indeterminate values, Python

algamdi There are the following examples: import pandas as pd df = pd.DataFrame({ 'Column A' : ['null',20,30,40,'null'],'Column B' : [100,'null',30,50,'null']}); I need a Python function that takes two columns and compares them: If a column is missing a valu

Replacing missing and indeterminate values, Python

algamdi There are the following examples: import pandas as pd df = pd.DataFrame({ 'Column A' : ['null',20,30,40,'null'],'Column B' : [100,'null',30,50,'null']}); I need a Python function that takes two columns and compares them: If a column is missing a valu